This connects Claude to three public biomedical APIs: PubMed's 35M+ papers via NCBI E-utilities, ClinicalTrials.gov's 400K+ trials, and the ISRCTN UK/European registry. You get three search tools, three structured prompts for common workflows like adverse event analysis and trial eligibility checking, and reference resources covering trial phases and FDA databases. No API keys needed since all three endpoints are public. Built with FastMCP. Reach for this when you're doing literature reviews, screening patients against recruiting trials, or cross-referencing published evidence with active drug studies. The prompts handle the boilerplate for generating clinical research briefs and safety profiles.
A standalone MCP server that gives any Claude agent real-time access to biomedical literature and clinical trials — no API keys required.
| Tool | Description |
|---|---|
search_pubmed | Search 35M+ peer-reviewed papers via NCBI E-utilities |
search_clinical_trials | Search 400K+ trials via ClinicalTrials.gov v2 API |
search_isrctn | Search UK/European trials via ISRCTN registry |
| Prompt | Description |
|---|---|
clinical-research-brief | Comprehensive evidence + trial brief for a condition |
adverse-event-analysis | Structured AE and safety profile for a drug |
trial-eligibility-checker | Patient eligibility assessment across recruiting trials |
| Resource | Description |
|---|---|
info://aria | Overview of ARIA capabilities and data sources |
reference://trial-phases | Phase I–IV definitions and FDA special designations |
reference://high-impact-journals | Curated high-impact journals by specialty |
reference://fda-databases | FDA databases for drug, safety, and regulatory research |
Once connected, ask Claude:
pip install aria-mcp-server
aria-mcp-server
Add to ~/Library/Application Support/Claude/claude_desktop_config.json:
{
"mcpServers": {
"aria-clinical-research": {
"command": "aria-mcp-server"
}
}
}
Restart Claude Desktop. The server will appear under Settings → Developer → Local MCP Servers.
aria-mcp-server/ ← root, where mcp-publisher runs
├── aria_mcp_server/ ← Python package
│ ├── __init__.py
│ ├── server.py
│ └── tools.py
├── server.json ← MCP registry metadata
├── pyproject.toml
├── README.md
├── LICENSE
└── glama.json
Pooja Kotecha · dinq.me/pkotecha-eng
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