Summary
Connects to the EBI Complex Portal, which catalogs macromolecular complexes and their biological annotations. Part of the Pipeworx gateway ecosystem that routes requests across hundreds of biological data sources. The docs don't list specific tools, but you can query it using ask_pipeworx with natural language questions about protein complexes, and the gateway handles the routing. Useful when you need programmatic access to curated complex data without dealing with REST APIs directly. Ships as a streamable HTTP endpoint, so no local installation needed. If you're already using Pipeworx for other life science data, this slots right into that workflow.
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mcp-complex-portal
EBI Complex Portal MCP.
Part of Pipeworx — an MCP gateway connecting AI agents to 826+ live data sources.
Tools
| Tool | Description |
|---|
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"complex-portal": {
"url": "https://gateway.pipeworx.io/complex-portal/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 826+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Complex Portal data" })
The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
Featured
Keep your Mac awake while Claude Code and 40+ AI agents run. Sleeps when they're idle.
One time payment $9 →Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →On Capafy, your Skill runs online 24/7 as an agent product, and you get paid every time someone uses it.
Start earning →