Summary
Connects your AI agent to cBioPortal, the open source cancer genomics platform. While the source doesn't list specific tools, this is part of the Pipeworx gateway ecosystem that routes requests through a natural language interface. Instead of calling structured API endpoints, you ask questions in plain English via ask_pipeworx and it handles tool selection and argument mapping automatically. Useful when you need to query tumor mutation data, patient cohorts, or genomic profiles without manually constructing cBioPortal API calls. Runs over streamable HTTP, so no local installation needed. You can connect to just the cBioPortal endpoint or the full Pipeworx gateway for 808+ data sources.
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mcp-cbioportal
cBioPortal MCP — cancer genomics portal.
Part of Pipeworx — an MCP gateway connecting AI agents to 808+ live data sources.
Tools
| Tool | Description |
|---|
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"cbioportal": {
"url": "https://gateway.pipeworx.io/cbioportal/mcp"
}
}
}
Or connect to the full Pipeworx gateway for access to all 808+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}
Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Cbioportal data" })
The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
Featured
Keep your Mac awake while Claude Code and 40+ AI agents run. Sleeps when they're idle.
One time payment $9 →Integrate web data into your AI product. One API to scrape website & brand data.
Get API Key Now →Agent, run crypto. Access onchain data & trade routes via 1inch.
Install now →On Capafy, your Skill runs online 24/7 as an agent product, and you get paid every time someone uses it.
Start earning →